Darts_BHT package

Submodules

Darts_BHT.BHT_wrapper module

Darts_BHT.config module

Provides general configurations for the Darts_BHT package, including version control and other constants.

Darts_BHT.convert_rmats module

Utils for connecting rMATS to Darts.

Darts_BHT.convert_rmats.read_rmats_counts(count_fp, annot_fp, event_type='SE')

Darts_BHT.convert_rmats.write_darts_counts_from_rmats(exon_dict, fn)

Darts_BHT.pretty_writter module

Darts_BHT.rmats_wrapper module

Transferred parser code from rMATS-turbo (v4.0.2).

This version of rMATS-turbo was compiled using Python 2.7 and Cython 0.27, with unicode UCS4.

If you encounter errors in importing the rmatspipeline.so module, please refer to the rMATS user guide page at http://rnaseq-mats.sourceforge.net/user_guide.htm

Darts_BHT.rmats_wrapper.add_rmats_parser(subparsers)

Darts_BHT.rmats_wrapper.doSTARMapping(args)

Darts_BHT.rmats_wrapper.process_parsed_rmats_args(args)

Module contents